PUBLISHED WORK
Y. Nakatani, S. Gaumer, Y. Shechtman, A.K. Gustavsson. "Long-Axial-Range Double-Helix Point Spread Functions for 3D Volumetric Super-Resolution Imaging". The Journal of Physical Chemistry B (2024).
A. Saguy, T. Nahimov, M. Lehrman, E. G. Mariscal, I. H. Cenalmor, O. Alalouf, A. Balakrishnan, M. Heilemann, R. Henriques, Y. Shechtman. "This Microtubule Does Not Exist: Super-Resolution Microscopy Image Generation by a Diffusion Model". Small Methods 2400672 (2024).
Y. S. Ezra, A. Saguy, G. Levin, L. E. Weiss, O. Alalouf, Y. Shechtman. "Monitoring DNA double strand break repair in Saccharomyces cerevisiae at high throughput and high resolution". bioRxiv 2024.08.23.609327 (2024).
I. H. Cenalmor, J. W. Pylvänäinen, M. G. Ferreira, C. T. Russell, A. Saguy, I. A. Carreras, Y. Shechtman, AI4Life Horizon Europe Program Consortium, G. Jacquemet, R. Henriques, E. G. Mariscal. "DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible". Nature Methods 21, 925–927 (2024)
N. Opatovski, E. Nehme, N. Zoref, I. Barzilai, R.O. Kedem, B. Ferdman, P. Keselman, O. Alalouf, Y. Shechtman. "Depth-enhanced high-throughput microscopy by compact PSF engineering". Nature Communications 15, 4861 (2024).
M. Fazel, K.S. Grussmayer, B. Ferdman, A. Radenovic, Y. Shechtman, J. Enderlein, S. Pressé. "Fluorescence microscopy: A statistics-optics perspective". Reviews of Modern Physics 96, 025003 (2024).
S. Liu, J. Chen, J. Hellgoth, L.R. Müller, B. Ferdman, C. Karras, D. Xiao, K.A. Lidke, R. Heintzmann, Y. Shechtman, Y. Li, J. Ries. "Universal inverse modeling of point spread functions for SMLM localization and microscope characterization". Nature Methods (2024).
D. Xiao, R. K. Orange, N. Opatovski, A. Parizat, E. Nehme, O. Alalouf, Y. Shechtman. "Large-FOV 3D localization microscopy by spatially variant point spread function generation". Science Advances 10, eadj3656 (2024)
Y. Nogin, D. Sapir, T. D. Zur, N. Weinberger, Y. Belinkov, Y. Ebenstein, Y. Shechtman. "OM2Seq: Learning retrieval embeddings for optical genome mapping". Bioinformatics Advance (2024)
D. Xiao, Z. Lin, Y. Shechtman. "All-in-focus large-FOV GRIN lens imaging by multi-focus image fusion". Optics Continuum 2, 11, 2290-2297 (2023)
Y. Nogin, D. Bar-Lev, D. Hanania, T. D. Zur, Y. Ebenstein, E. Yaakobi, N. Weinberger, Y. Shechtman. "Design of optimal labeling patterns for optical genome mapping via information theory". Bioinformatics 39, 10 (2023)
S. Jang, K. K. Narayanasamy, J. V. Rahm, A. Saguy, J. Kompa, M. S. Dietz, K. Johnsson, Y. Shechtman, M. Heilemann. "Neural network-assisted single-molecule localization microscopy with a weak-affinity protein tag". Biophysical Reports 18, 3(3),100123 (2023)
R. O. Kedem, N. Opatovski, D. Xiao, B. Ferdman, O. Alalouf, S. K. Pal, Z. Wang, H. Emde, M. Weber, S. J. Sahl, A. Ponjavic, A. Arie, S. W. Hell, Y. Shechtman. "Near index matching enables solid diffractive optical element fabrication via additive manufacturing". Light: Science & Applications, 12(1), 222 (2023)
A. Saguy, O. Alalouf, N. Opatovski, S. Jang, M. Heilemann and Y. Shechtman. "DBlink: Dynamic localization microscopy in super spatiotemporal resolution via deep learning". Nature Methods (2023)
A. Saguy, T. Nahimov, M. Lehrman, O. Alalouf, Y. Shechtman. "This microtubule does not exist: Super-resolution microscopy image generation by a diffusion model". bioRxiv 2023.07.06.548004 (2023)
V. Giovanni, et al. "Roadmap on Deep Learning for Microscopy". arXiv preprint arXiv:2303.03793 (2023)
Y. Nogin, T. D. Zur, S. Margalit, I. Barzilai, O. Alalouf, Y. Ebenstein, Y. Shechtman, "DeepOM: Single-molecule optical genome mapping via deep learning", Bioinformatics (2023)
O. Goldenberg, B. Ferdman, E. Nehme, Y. S. Ezra, Y. Shechtman. "Learning Optimal Multicolor PSF Design for 3D Pairwise Distance Estimation". Intelligent Computing, Vol 2022, 0004 (2022)
N. Opatovski, D. Xiao, G. Harari, Y. Shechtman. "Monocular kilometer-scale passive ranging by point-spread function engineering". Optics Express, 30 (21), 37925-37937 (2022)
R. Eshel, V. Frumkin, M. Nice, O. Luria, B. Ferdman, N. Opatovski, K. Gommed, M. Shusteff, Y. Shechtman, M. Bercovici. "Programmable thermocapillary shaping on thin liquid films". Flow, 2, E27 (2022)
B. Ferdman, A. Saguy, D. Xiao, and Y. Shechtman. "Diffractive optical system design by cascaded propagation". Optics Express, 30 (15), 27509-27530 (2022).
E. Sedov, E. Koren, S. Chopra, R. Ankawa, Y. Yosefzon, M. Yusupova, L. E. Weiss, A. Mahly, A. Soffer, A. Feldman, C. Luxenburg, Y. Shechtman, and Y. Fuchs. "THY1-mediated mechanisms converge to drive YAP activation in skin homeostasis and repair". Nature Cell Biology (2022).
O. Adir, M. R. Albalik, R. Abel, L. E. Weiss, G. Chen, A. Gruber, O. Staufer, Y. Kurman, I. Kaminer, J. S. Roitman, I. Platzman, L. Gepstein, Y. Shechtman, B. A. Horwitz, A. Scheroeder. "Synthetic cells with self-activating optogenetic proteins communicate with natural cells". Nature Communications, 13, 2328 (2022)
T. Naor, Y. Nogin, E. Nehme, B. Ferdman, L. E. Weiss, O. Alalouf, and Y. Shechtman. "Quantifying cell cycle dependent chromatin dynamics during interphase by live 3D tracking", iScience, 104197 (2022)
D. Allen, L.E. Weiss, A. Saguy, M. Rosenberg, O. Iancu, O. Matalon, C. Lee, K. Beider, A. Nagler, Y. Shechtman, and A. Hendel, "High-throughput Imaging of CRISPR- and Recombinant Adeno-associated Virus–induced DNA Damage Response in Human Hematopoietic Stem and Progenitor Cells", The CRISPR Journal (2022)
A. Saguy, F. Jünger, A. Peleg, B. Ferdman, E. Nehme, A. Rohrbach, and Y. Shechtman, "Deep-ROCS: from speckle patterns to superior-resolved images by deep learning in rotating coherent scattering microscopy", Optics Express, 29 (15), 23877-23887 (2021)
N. Opatovski, Y. S. Ezra, L. E. Weiss, B. Ferdman, R. Orange and Y. Shechtman, "Multiplexed PSF Engineering for Three-Dimensional Multicolor Particle Tracking", Nano Letters (2021)
E. Nehme*, B. Ferdman*, L. E. Weiss; T. Naor; D. Freedman; T. Michaeli; Y. Shechtman. "Learning optimal wavefront shaping for multi-channel imaging", in IEEE Transactions on Pattern Analysis and Machine Intelligence (2021). (*equal contribution)
A. Saguy, T. N. Baldering, L. E. Weiss, E. Nehme, C. Karathanasis, M. S. Dietz, M. Heilemann, and Y. Shechtman, "Automated Analysis of Fluorescence Kinetics in Single-Molecule Localization Microscopy Data Reveals Protein Stoichiometry", The Journal of Physical Chemistry B, 125, 22, 5716–5721 (2021)
R. Orange-Kedem, E. Nehme, L. E. Weiss, B. Ferdman, O. Alalouf, N. Opatovski and Y. Shechtman, "3D printable diffractive optical elements by liquid immersion", Nature Communications 12, 3067 (2021)
L. von Chamier, R. F. Laine, J. Jukkala, C. Spahn, D. Krentzel, E. Nehme, M. Lerche, S. Hernández-Pérez, P. K. Mattila, E. Karinou, S. Holden, A. Can Solak, A. Krull, T.O. Buchholz, M. L. Jones, L. A. Royer, C. Leterrier, Y. Shechtman, F. Jug, M. Heilemann, G. Jacquemet & R. Henriques, "Democratising deep learning for microscopy with ZeroCostDL4Mic", Nature Communications, 12, 2276 (2021)
R. Gordon-Soffer, L. E. Weiss, R. Eshel, B. Ferdman, E. Nehme, M. Bercovici, and Y. Shechtman. "Microscopic scan-free surface profiling over extended axial ranges by point-spread-function engineering". Science Advances, 6, 44 (2020)
E. Nehme , D. Freedman, R. Gordon, B. Ferdman, L. E. Weiss, O. Alalouf, T. Naor, R. Orange, T. Michaeli and Y. Shechtman. "DeepSTORM3D: Dense 3D localization microscopy and PSF engineering by deep learning". Nature Methods, 17, 734–740 (2020)
B. Ferdman, E. Nehme, L. E. Weiss, R. Orange, O. Alalouf, Y. Shechtman. "VIPR: Vectoral implementation of phase retrieval for fast and accurate microscopic pixel-wise pupil estimation". Optics Express, 28, 7, 10179-10198 (2020)
L.E. Weiss, Y. S. Ezra, S. E. Goldberg, B. Ferdman, O. Adir, A. Schroeder, O. Alalouf, Y. Shechtman. "Three-dimensional localization microscopy in live flowing cells". Nature Nanotechnology, 15, 500–506 (2020)
N. Granik, L.E. Weiss, E. Nehme, M. Shalom, M. Chein, E. Perlson, Y. Roichman, Y. Shechtman. "Single particle diffusion characterization by deep learning". Biophysical Journal, 117, 2, 185-192 (2019)
E. Hershko*, L.E. Weiss*, T. Michaeli, Y. Shechtman. "Multicolor localization microscopy and point-spread-function engineering by deep learning". Optics Express, 27, 5, 6158-6183 (2019) (*Equal Contribution)
B. Ferdman*, L.E. Weiss*, O. Alalouf, Y. Haimovich, Y. Shechtman. "Ultrasensitive Refractometry via Supercritical Angle Fluorescence". ACS Nano 12, 11892-11898 (2018) (*Equal Contribution)
L.E. Weiss, T. Naor, and Y. Shechtman. "Observing DNA in live cells". Biochemical Society Transactions, 46, 3, 729–740 (2018)
M. Backlund, Y. Shechtman, and R.L Walsworth. "Fundamental precision bounds for three-dimensional optical localization microscopy with Poisson statistics". Physical Review Letters, 121, 023904 (2018)
E. Nehme, L.E. Weiss, T. Michaeli, and Y. Shechtman. "Deep-STORM: Super resolution single molecule microscopy by deep learning". Optica 4, 458-464 (2018)
A-K Gustavsson, P. N. Petrov, M. Y. Lee, Y. Shechtman, and W. E. Moerner. "3D Single-molecule super-resolution microscopy with a tilted light sheet". Nature Communications, 9, 123 (2018)
2017 and Earlier
Y. Shechtman, A-K Gustavsson, P. N. Petrov, E. Dultz, M.Y. Lee, K. Weis, and W.E. Moerner. "Observation of live chromatin dynamics in cells via 3D localization microscopy using tetrapod point spread function". Biomedical Optics Express, 8, 5735-5748 (2017)
P. N. Petrov, Y. Shechtman, and W.E. Moerner. "Measurement-based estimation of global pupil functions in 3D localization microscopy". Optics Express, 25, 7 (2017)
A. von Diezmann, Y. Shechtman, and W.E. Moerner. "Three-dimensional localization of single molecules for super-resolution imaging and single-particle tracking". Chemical Reviews, 117, 11, 7244–7275 (2017)
Y. Shechtman, L.E. Weiss, A.S. Backer, M.Y. Lee, and W.E. Moerner. "Multicolor localization microscopy by point-spread-function engineering". Nature Photonics, 10, (2016)
D. Oren, Y. Shechtman, M. Mutzafi, Y. C. Eldar, and M. Segev. "Sparsity-based recovery of three-photon quantum states from two-fold correlations". Optica, 3, 3 (2016)
W.E. Moerner, Y. Shechtman, Q. Wang. "Single-molecule spectroscopy and imaging over the decades". Faraday Discussions, 184 (2015)
P. Sidorenko, O. Kfir, Y. Shechtman, A. Fleischer, Y. C. Eldar, M. Segev, and O. Cohen. "Sparsity-based super-resolved coherent diffraction imaging of one-dimensional objects". Nature Communications, 6, (2015)
M. Mutzafi, Y. Shechtman, Y. C. Eldar, O. Cohen, and M. Segev. "Sparsity-based ankylography for recovering 3D molecular structures from single-shot 2D scattered light intensity". Nature Communications, 6, (2015)
Y. Shechtman, L.E. Weiss, A.S.Backer, S.J. Sahl, and W.E. Moerner. "Precise 3D scan-free multiple-particle tracking over large axial range with tetrapod point spread functions". Nano Letters, 15 (6), 4194-4199 (2015)
Y. Shechtman, Y.C. Eldar, O. Cohen, H.N. Chapman, J. Miao and M. Segev. "Phase retrieval with application to optical imaging". IEEE Signal Processing Magazine, 32, 2,87-109 (2015)
Y. Shechtman, S.J. Sahl, A.S.Backer and W.E. Moerner. "Optimal point spread function design for 3D imaging". Physical Review Letters, 113, 133902 (2014)
Y. Shechtman, A. Beck, and Y. C. Eldar. "GESPAR: Efficient phase retrieval of sparse signals". IEEE Transactions on Signal Processing, 62, 4, 928-938 (2014)
Y. Shechtman, E. Small, Y. Lahini, M. Verbin, Y.C. Eldar, Y. Silberberg and M. Segev. "Sparsity-based super-resolution and phase-retrieval in waveguide arrays". Optics Express, 21, 20, 24015-24024 (2013)
Y. Shechtman, Y. C. Eldar, O. Cohen, and M. Segev. "Efficient coherent diffractive imaging for sparsely varying objects". Optics Express, 21, 5, 6327-6338 (2013)
Y. Shechtman, L.E. A. Szameit*, Y. Shechtman*, E. Osherovich*, E. Bullkich, P. Sidorenko, H. Dana, S. Steiner, E. B. Kley, S. Gazit, T. Cohen-Hyams, S. Shoham, M. Zibulevsky, I. Yavneh, Y. C. Eldar, O. Cohen, and M. Segev. "Sparsity-based single-shot subwavelength coherent diffractive imaging". Nature Materials, 11 (5), 455-459 (2012) (*equal contribution)
R. Keil, Y. Lahini, Y. Shechtman, M. Heinrich, R. Pugatch, F. Dreisow, A. Tünnermann, S. Nolte, A. Szameit. "Perfect imaging through a disordered waveguide lattice". Optics Letters, 37 (5), 809-811 (2012)
Y. Lahini, Y. Bromberg, Y. Shechtman, A. Szameit, D.N. Christodoulides, R. Morandotti, and Y. Silberberg. "Hanbury Brown and Twiss correlations of Anderson localized waves". Physical Review A, 84, 41806 (2011)
Y. Shechtman, Y.C. Eldar, A. Szameit, and M. Segev. "Sparsity based sub-wavelength imaging with partially incoherent light via quadratic compressed sensing". Optics Express, 19, 16, 14807-24822 (2011)
Y. Shechtman, S. Gazit, A. Szameit, Y.C. Eldar, and M. Segev. "Super-resolution and reconstruction of sparse images carried by light". Optics Letters, 35(8), 1148-1150 (2010)